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The medical conversational system can relieve doctors’ burden and improve healthcare efficiency, especially during the COVID-19 pandemic. However, the existing medical dialogue systems have the problems of weak scalability, insufficient knowledge, and poor controllability. Thus, we propose a medical conversational question-answering (CQA) system based on the knowledge graph, namely MedConQA, which is designed as a pipeline framework to maintain high flexibility. Our system utilizes automated medical procedures, including medical triage, consultation, image-text drug recommendation, and record. Each module has been open-sourced as a tool, which can be used alone or in combination, with robust scalability. Besides, to conduct knowledge-grounded dialogues with users, we first construct a Chinese Medical Knowledge Graph (CMKG) and collect a large-scale Chinese Medical CQA (CMCQA) dataset, and we design a series of methods for reasoning more intellectually. Finally, we use several state-of-the-art (SOTA) techniques to keep the final generated response more controllable, which is further assured by hospital and professional evaluations. We have open-sourced related code, datasets, web pages, and tools, hoping to advance future research.