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We introduce LLM×MapReduce-V3, a hierarchically modular agent system designed for long-form survey generation. Building on the prior work, LLM×MapReduce-V2, this version incorporates a multi-agent architecture where individual functional components, such as skeleton initialization, digest construction, and skeleton refinement, are implemented as independent model-context-protocol (MCP) servers. These atomic servers can be aggregated into higher-level servers, creating a hierarchically structured system. A high-level planner agent dynamically orchestrates the workflow by selecting appropriate modules based on their MCP tool descriptions and the execution history. This modular decomposition facilitates human-in-the-loop intervention, affording users greater control and customization over the research process. Through a multi-turn interaction, the system precisely captures the intended research perspectives to generate a comprehensive skeleton, which is then developed into an in-depth survey. Human evaluations demonstrate that our system surpasses representative baselines in both content depth and length, highlighting the strength of MCP-based modular planning. Demo, video and code are available at https://github.com/thunlp/LLMxMapReduce.