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The ability to acquire high-resolution, large-scale geospatial data at an unprecedented using LiDAR and other related technologies has intensified the need for scalable algorithms for terrain analysis, including *shortest-path-distance* (SPD) queries on large-scale terrain digital elevation models (DEMs). In this paper, we present a *neural data structure* for efficiently answering SPD queries approximately on a large terrain DEM, which is based on the recently proposed neural geodesic field (NeuroGF) framework (Zhang et al., 2023)---the state-of-the-art neural data structure for estimating geodesic distance.In particular, we propose a decoupled-NeuroGF data structure combined with an efficient two-stage mixed-training strategy, which significantly reduces computational bottlenecks and enables efficient training on terrain DEMs at a scale not feasible before. We demonstrate the efficacy of our approach by performing detailed experiments on both synthetic and real data sets.For instance, we can train a small model with around 70000 parameters on a terrain DEM with 16 million nodes in a matter of hours that can answer SPD queries with 1\% relative error in at most 10ms per query.