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The importance of higher-order relations is widely recognized in numerous real-world systems. However, annotating them is a tedious and sometimes even impossible task. Consequently, current approaches for data modelling either ignore the higher-order interactions altogether or simplify them into pairwise connections. To facilitate higher-order processing, even when a hypergraph structure is not available, we introduce SPHINX, a model that learns to infer a latent hypergraph structure in an unsupervised way, solely from the final task-dependent signal. To ensure broad applicability, we design the model to be end-to-end differentiable, capable of generating a discrete hypergraph structure compatible with any modern hypergraph networks, and easily optimizable without requiring additional regularization losses.Through extensive ablation studies and experiments conducted on four challenging datasets, we demonstrate that our model is capable of inferring suitable latent hypergraphs in both transductive and inductive tasks. Moreover, the inferred latent hypergraphs are interpretable and contribute to enhancing the final performance, outperforming existing methods for hypergraph prediction.