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Hardware enclaves are designed to execute small pieces of sensitive code or to operate on sensitive data, in isolation from larger, less trusted systems. Partitioning a large, legacy application requires significant effort. Partitioning an application written in a managed language, such as Java, is more challenging because of mutable language characteristics, extensive code reachability in class libraries, and the inevitability of using a heavyweight runtime. Civet is a framework for partitioning Java applications into enclaves. Civet reduces the number of lines of code in the enclave and uses language-level defenses, including deep type checks and dynamic taint-tracking, to harden the enclave interface. Civet also contributes a partitioned Java runtime design, including a garbage collection design optimized for the peculiarities of enclaves. Civet is efficient for data-intensive workloads; partitioning a Hadoop mapper reduces the enclave overhead from 10× to 16–22% without taint-tracking or 70–80% with taint-tracking.