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Federated graph learning (FGL) aims to collaboratively train a global graph neural network (GNN) on multiple private graphs with preserving the local data privacy. Besides the common cases of data heterogeneity in conventional federated learning, FGL faces the unique challenge of topology heterogeneity. Most of existing FGL methods alleviate the negative impact of heterogeneity by introducing global signals.However, the manners of creating increments might not be effective and significantly increase the computation amount. In light of this, we propose the FedATH, an FGL method with Alleviating Topology Heterogeneity from a causal perspective. Inspired by the causal theory, we argue that not all edges in a topology are necessary for the training objective, less topology information might make more sense.With the aid of edge evaluator, the local graphs are divided into causal and biased subgraphs. A dual-GNN architecture is used to encode the two subgraphs into corresponding representations. Thus, the causal representations are drawn closer to the training objective while the biased representations are pulled away from it. Further, the Hilbert-Schmidt Independence Criterion is employed to strengthen the separability of the two subgraphs. Extensive experiments on six real-world graph datasets are conducted to demonstrate the superiority of the proposed FedATH over the compared approaches.